# BLAST Color schema description

- Color schema 1:
  - masked regions in lower case
  - everything else in upper case
- Color schema 2:
  - masked regions in lower case, gray letters
  - Unaligned regions in italic
  - everything else in upper case
- Color schema 3:
  - No middle line.
  - Masked regions in lower case, gray letters unless identity
  - Everything else in upper case
  - Unaligned regions in italic
  - Identity shown in red color
  - Similarity shown in blue color
  - Mismatches shown in black color
- Color schema 4:
  - No middle line.
  - Masked regions in lower case, gray letters
  - Everything else in upper case
  - Unaligned regions in italic
  - Identity shown in blue color
  - Similarity shown in brown color
  - Mismatches shown in red color
- Color schema 5:
  - No middle line.
  - Masked regions in lower case, gray letters
  - Everything else in upper case
  - Unaligned regions in italic
  - Identity shown in red color
  - Similarity shown in blue color
  - Mismatches shown in black color
- Color schema 6:
  - No middle line.
  - Masked regions in lower case, gray letters unless identity
  - Everything else in upper case
  - Unaligned regions in italic
  - Identity shown in red bold color
  - Similarity shown in blue color
  - Mismatches shown in gray color

Last modified: Tue May 16 16:18:28 EDT 2000