A B C D E F G H I L M N O Q R S T U

## R

randNumGenerator - Static variable in class artificialFastqGenerator.ArtificialFastqGenerationUtils
Read - Class in artificialFastqGenerator
  An instance of this class corresponds to a read in an artificial fastq file.
Read(ArrayList<Nucleobase>, long, Read, boolean, char[], char[], int, int) - Constructor for class artificialFastqGenerator.Read
  Initialise a new Read object.
readLength - Static variable in class artificialFastqGenerator.Main
readsContainingNfilter - Static variable in class artificialFastqGenerator.Main
referenceGenomePath - Static variable in class artificialFastqGenerator.Main
resetFieldsForNewChromosome() - Method in class artificialFastqGenerator.NucleobaseAndReadFactory
  Reset fields ready to process a new chromosome.
resetNumBaseCallErrors() - Method in class artificialFastqGenerator.QualityScoreAndErrorGenerator
  Reset the number of simulated base call errors to 0.

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