MEGAHIT_CORE_POPCNT(1)

NAME
megahit_core_popcnt - ultra-fast and memory-efficient meta-genome assembler

SYNOPSIS
megahit_core_popcnt <sub_program> [sub options]

DESCRIPTION

    sub-programs:

assemble
    assemble from SdBG

local
    local asssembly

iterate
    extract iterative edges

buildlib
    build read library

count
    kmer counting

read2sdbg
    build sdbg from reads

seq2sdbg
    build sdbg from megahit contigs + edges

contig2fastg
    convert MEGAHIT's k*.contigs.fa to fastg format

readstat
    calculate read stats (# of reads, bases, longest, shortest, average)

filterbylen
    filter contigs by length

checkcpu
    check whether the run-time CPU supports POPCNT and BMI2

checkpopcnt
    check whether the run-time CPU supports POPCNT

checkbmi2
    check whether the run-time CPU supports BMI2

dumpversion
    dump version

kmax
    the largest k value supported

AUTHOR
This manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage of the program.