/*
 * Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard.  All Rights Reserved.
 *
 * This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
 * Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
 *
 * THE SOFTWARE IS PROVIDED "AS IS." THE BROAD AND MIT MAKE NO REPRESENTATIONS OR
 * WARRANTES OF ANY KIND CONCERNING THE SOFTWARE, EXPRESS OR IMPLIED, INCLUDING,
 * WITHOUT LIMITATION, WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
 * PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS, WHETHER
 * OR NOT DISCOVERABLE.  IN NO EVENT SHALL THE BROAD OR MIT, OR THEIR RESPECTIVE
 * TRUSTEES, DIRECTORS, OFFICERS, EMPLOYEES, AND AFFILIATES BE LIABLE FOR ANY DAMAGES
 * OF ANY KIND, INCLUDING, WITHOUT LIMITATION, INCIDENTAL OR CONSEQUENTIAL DAMAGES,
 * ECONOMIC DAMAGES OR INJURY TO PROPERTY AND LOST PROFITS, REGARDLESS OF WHETHER
 * THE BROAD OR MIT SHALL BE ADVISED, SHALL HAVE OTHER REASON TO KNOW, OR IN FACT
 * SHALL KNOW OF THE POSSIBILITY OF THE FOREGOING.
 */

package org.broad.igv.graph;

import org.broad.igv.feature.genome.Genome;
import org.broad.igv.ui.IGV;

import javax.swing.*;
import java.io.IOException;

/**
 * @author jrobinso
 * @date Oct 12, 2010
 */
public class MainWindow extends JFrame {


    // The constructor

    public MainWindow() throws IOException {

        Genome genome = IGV.getInstance().getGenomeManager().getCurrentGenome();

        // Create a test graph and graph panel
        //Graph graph =  GeneUtils.getGraphFor("ARF1"); // createGraph();
        Graph graph =  GeneUtils.getGraphFor("TCOF1", genome); // createGraph();

        GraphPanel2 graphPanel = new GraphPanel2();
        graphPanel.setGraph(graph);

        // The "add" method is a standard Swing method, inherite from JPanel
        add(graphPanel);

        // Set initial size
        graphPanel.setSize(800, 400);


    }



    // Create graph for a gene


    public static void main(String[] args) throws IOException {

        MainWindow window = new MainWindow();
        window.setSize(600, 400);
        window.setVisible(true);

    }

}
