This package was debianized by Ivan Efremov <iefremov@unipro.ru> on
Mon, 26 Jan 2009 19:18:51 +0600

It was downloaded from: http://ugene.unipro.ru/download.html

Modifications to the original source package:
    The following directories have been removed:
    ./bkm
    ./installer/linux
    ./installer/macosx
    ./installer/windows
    ./src/libs_3rdparty/zlib
    since they contain useless for this package data.

Upstream Author: UniPro <ugene@unipro.ru>

Copyright:
    Copyright (C) 2008, 2009 by UniPro <ugene@unipro.ru>
        
License:
    This suite of programs is free software. You can redistribute it
    and/or modify it under the terms of the GNU General Public License as
    published by the Free Software Foundation; either version 2 of the
    License, or (at your option) any later version.

    In other words, you are free to modify, copy, or redistribute this
    source code and its documentation in any way you like, but you must
    distribute all derivative versions as free software under the same
    terms that I've provided my code to you (i.e. the GNU General Public
    License). This precludes any use of the code in proprietary or
    commercial software unless your source code is made freely available.

    If you wish to use Unipro UGENE code under a different Open Source
    license that's not compatible with the GPL (like the Artistic License, BSD
    license, or the Netscape Public License), please contact us
    (ugene@unipro.ru) for permission.

    Incorporation into commercial software under non-GPL terms is possible
    by obtaining a specially licensed version from Unipro.
    Contact 'ugene@unipro.ru' to arrange licensing terms.
    
    This software is distributed in the hope that it will be useful, but
    WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
    General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this Unipro UGENE release, in the file LICENSE;
    if not, write to the Free Software Foundation, Inc.,
    51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.

    See /usr/share/common-licenses/GPL for the complete text of the GPL


Files: src/core/src/document_format/IOLibsUtils.h
       src/core/src/document_format/ABIFormat.cpp
       src/core/src/document_format/SCFFormat.cpp
Copyright: © 1994 Medical Research Council. All rights reserved.
License:
    Permission to use, copy, modify and distribute this software and its
    documentation for any purpose is hereby granted without fee, provided that
    this copyright and notice appears in all copies.

    MRC disclaims all warranties with regard to this software.
   

The File src/libs_3rdparty/qtbindings_core/src/qtscriptconcurrent.h
    Copyright (C) 1992-2008 Trolltech ASA
    
    Released under the terms of GPL (v2 or any later version).
    (http://labs.trolltech.com/page/Projects/QtScript/Generator)


The Files in src/libs_3rdparty/qtbindings_core
	     src/libs_3rdparty/qtbindings_gui
             src/libs_3rdparty/qtbindings_xml
             
    are automatically generated by Qt Script Generator 
    (http://labs.trolltech.com/page/Projects/QtScript/Generator) and have 
    the same license as the API they binds. Therefore, this files are 
    relased under the terms of GPL.


The File src/plugins_3rdparty/uhmmer/src/hmmer2/sre_string.cpp
    Copyright (c) 1998 Todd C. Miller <Todd.Miller@courtesan.com>

    Permission to use, copy, modify, and distribute this software for any
    purpose with or without fee is hereby granted, provided that the above
    copyright notice and this permission notice appear in all copies.

    THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
    WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
    MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
    ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
    WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
    ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
    OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.


The Files in src/plugins_3rdparty/uhmmer
    HMMER - Biological sequence analysis with profile hidden Markov models
    Copyright (C) 1992-2003 HHMI/Washington University School of Medicine

    This suite of programs is free software. You can redistribute it
    and/or modify it under the terms of the GNU General Public License as
    published by the Free Software Foundation; either version 2 of the
    License, or (at your option) any later version.

    In other words, you are free to modify, copy, or redistribute this
    source code and its documentation in any way you like, but you must
    distribute all derivative versions as free software under the same
    terms that I've provided my code to you (i.e. the GNU General Public
    License). This precludes any use of the code in proprietary or
    commercial software unless your source code is made freely available.

    If you wish to use HMMER code under a different Open Source license
    that's not compatible with the GPL (like the Artistic License, BSD
    license, or the Netscape Public License), please contact me
    (eddy@genetics.wustl.edu) for permission.

    Incorporation into commercial software under non-GPL terms is possible
    by obtaining a specially licensed version from Washington University
    School of Medicine. Contact Jack Pincus (jhpincus@cris.com) to arrange
    licensing terms.

    This software is distributed in the hope that it will be useful, but
    WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
    General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this HMMER release, in the file LICENSE; if not, write to
    the Free Software Foundation, Inc.,
    51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
                                                
    See /usr/share/common-licenses/GPL for the complete text of the GPL

Note:
The Files in src/plugins_3rdparty/uhmmer/src/u_spu and 
             src/plugins_3rdparty/uhmmer/src/uhmmsearch_cell.cpp
    are modified sources from the HMMER-Cell project 
    (ftp://selab.janelia.org/pub/software/hmmer/contrib-2.3.2/HMMerCell_src_02272008.tar.gz)
    
    Original Copyright: 2008, International Business Machines Corporation
    Authors: Kursad Albayraktaroglu, Jizhu Lu

    This files are released under the terms of GPL (v2 or any later version).

            
The Files in src/plugins_3rdparty/umuscle
    are PUBLIC DOMAIN (see http://www.drive5.com/muscle/license.htm)
   



Packaging:
    Copyright (C) 2008, 2009 by Ivan Efremov <iefremov@unipro.ru>
    released under the GPL.
